Dataset MT0.N2.LD • 2D • AS • DH • BP
Experimental conditions- Structure: MT0, 3 microtubules in the field of view of 6.4 x 6.4 x 1.5 μm
- Sequence: 19'996 frames
- Modality: 2D, 3D-Astigmatism, 3D-Double-Helix, 3D-Biplane
- Noise N2: photoswitchable fluorescent protein labelled sample such as mEos2 or Dendra2
- Molecule density: 2
Reference: Sage et al., Nature Methods 2019. Open access PDF.
Download Dataset MT0.N2.LD
Published June 7, 2016 as training dataset for the challenge 2016
| Type | Modality | Link to Download | Format | Size |
| Sequence | 2D | MT0.N2.LD-2D-Exp-as-list | ZIP, n TIFF images | 103 Mb |
| Sequence | 3D-Biplane | MT0.N2.LD-BP-Exp-as-list | ZIP, n TIFF images | 197 Mb |
| Sequence | 3D-Biplane | MT0.N2.LD-BP-Exp-as-stack | ZIP, 1 TIFF stack of n images | 181 Mb |
| Sequence | 2D | MT0.N2.LD-2D-Exp-as-stack | ZIP, 1 TIFF stack of n images | 91 Mb |
| Sequence | 3D-Biplane (1 plane) | MT0.N2.LD-BP+250-as-list | ZIP, n TIFF images | 103 Mb |
| Sequence | 3D-Astigmatism | MT0.N2.LD-AS-Exp-as-list | ZIP, n TIFF images | 103 Mb |
| Sequence | 3D-Biplane (1 plane) | MT0.N2.LD-BP-250-as-list | ZIP, n TIFF images | 103 Mb |
| Sequence | 3D-Astigmatism | MT0.N2.LD-AS-Exp-as-stack | ZIP, 1 TIFF stack of n images | 91 Mb |
| Sequence | 3D-Double-Helix | MT0.N2.LD-DH-Exp-as-stack | ZIP, 1 TIFF stack of n images | 92 Mb |
| Sequence | 3D-Double-Helix | MT0.N2.LD-DH-Exp-as-list | ZIP, n TIFF images | 104 Mb |
| Sequence | 3D-Biplane (1 plane) | MT0.N2.LD-BP+250-as-stack | ZIP, 1 TIFF stack of n images | 90 Mb |
| Sequence | 3D-Biplane (1 plane) | MT0.N2.LD-BP-250-as-stack | ZIP, 1 TIFF stack of n images | 90 Mb |
Ground-truth MT0.N2.LD
- Position of molecules
positions.csv - Activation of molecules
activations.csv - Statistics of fluorophores
stats_activation_fluos.csv - Statistics of frames
stats_activations_frames.csv - Summary activation
stats_activation_sumary.csv
Results of Simulation MT0.N2.LD
Parameters of simulation
| Camera | ||
| Photon converter factor or Quantum efficiency (QE) | 0.90 | e-/Ph. |
| Resolution | 64 | pixels |
| Pixelsize | 100.00 | nm |
| Field of view | 6400.00 | nm |
| Optics | ||
| Wavelength | 660.00 | nm |
| Numerical aperture (NA) | 1.49 | |
| Autofluorescence | ||
| Poisson Distribution | ||
| Camera Noise | ||
| Read-out: Gaussian distribution | 74.4 | |
| EMGain: Gamma | 300.0 | |
| Spurious noise: Poisson distribution | 0.0020 | |
| Analog Digital Conversion | ||
| Total gain: QE*EM_gain/e_per_ADU | 6.00 | |
| Electron conversion e- per ADU | 45.00 | e-/DN |
| Baseline | 100.00 | DN |
| Saturation | 65535.00 | DN |
| Quantization | 16-bit | |
| Computational Parameters | ||
| Thickness | 1500.00 | nm |
| Frames | 19996 | |
| Multithreading | Off-1 Thread | |
| Pixelsize to PSF convolution | 10.0 | nm |
| Pixelsize for autofluorescence | 100.0 | nm |
| Pixelsize of the camera | 100.0 | nm |
| File format | TIFF 16-bits | |