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Computational Resources for Super-Resolution Microscopy

Dataset seashell • 2D

The synthetic sample has been created articifically using a 3D artificial structure shape. This shape represents a seashell of six branches with various fluorophore densities. This sample is provided in two versions: flat sample (no Z) and thick sample (1 μm of depth). ",

  • Synthetic sample of 3D artificial shape
  • Two versions: large (thickness of 1um) and flat
  • Short sequence: 100 frames, 2000 particles
  • Long sequence: 2500 frames, 50'000 particles

Reference: Sage et al., Nature Methods 2015. Open access PDF.

Datasets Challenge 2D sample
Download Dataset seashell

Published February 1, 2013 as training dataset for the SMLM challenge 2013

File Link to Download Size
particles-2000-flat.xlsparticles-2000-flat.xls0 Mb
seq-50000-flat.zipseq-50000-flat.zip7 Mb
seq-2000-flat.zipseq-2000-flat.zip0 Mb
seq-2000-flat-noisy.zipseq-2000-flat-noisy.zip11 Mb
particles-50000-flat.xlsparticles-50000-flat.xls5 Mb
seq-50000-large-noisy.zipseq-50000-large-noisy.zip273 Mb
seq-50000-large.zipseq-50000-large.zip31 Mb
seq-2000-large-noisy.zipseq-2000-large-noisy.zip11 Mb
seq-2000-large.zipseq-2000-large.zip1 Mb
particles-2000-large.xlsparticles-2000-large.xls0 Mb
seq-50000-flat-noisy.zipseq-50000-flat-noisy.zip275 Mb
particles-50000-large.xlsparticles-50000-large.xls5 Mb
Settings
{
  "name": "Seashell",
  "description": "The synthetic sample has been created articifically using a 3D artificial structure shape. This shape represents a seashell of six branches with various fluorophore densities. This sample is provided in two versions: flat sample (no Z) and thick sample (1 μm of depth). ",
  "thumbnail": "/snapshot.gif",
  "header": [
    "Synthetic sample of 3D artificial shape",
    "Two versions: large (thickness of 1um) and flat",
    "Short sequence: 100 frames, 2000 particles",
    "Long sequence: 2500 frames, 50'000 particles"
  ],
  "sequence": {
    "Numerical aperture": "1.4",
    "Immersion refractive index": "1.5",
    "Sample refractive index": "1",
    "Working distance": "150nm",
    "Wavelength": "500nm",
    "Pixel size": "150nm",
    "Axial sampling": "3.9nm"
  },
  "data": [
    [
      "Thick sample, short sequence",
      "/seq-2000-large.zip",
      "ZIP",
      "1.2MB"
    ],
    [
      "Thick sample, short sequence",
      "/particles-2000-large.xls",
      "XLS",
      "0.2MB"
    ],
    [
      "Thick sample, short sequence,noisy",
      "/seq-2000-large-noisy.zip",
      "ZIP",
      "10.9MB"
    ],
    [
      "Thick sample, long sequence",
      "/seq-50000-large.zip",
      "ZIP",
      "30MB"
    ],
    [
      "Thick sample, long sequence",
      "/particles-50000-large.xls",
      "XLS",
      "5MB"
    ],
    [
      "Thick sample, long sequence,noisy",
      "/seq-50000-large-noisy.zip",
      "ZIP",
      "272MB"
    ],
    [
      "Flat sample, short sequence",
      "/seq-2000-flat.zip",
      "ZIP",
      "0.2MB"
    ],
    [
      "Flat sample, short sequence",
      "/particles-2000-flat.xls",
      "XLS",
      "0.2MB"
    ],
    [
      "Flat sample, short sequence,noisy",
      "/seq-2000-flat-noisy.zip",
      "ZIP",
      "10.9MB"
    ],
    [
      "Flat sample, long sequence",
      "/seq-50000-flat.zip",
      "ZIP",
      "5.7MB"
    ],
    [
      "Flat sample, long sequence",
      "/particles-50000-flat.xls",
      "XLS",
      "5MB"
    ],
    [
      "Flat sample, long sequence,noisy",
      "/seq-50000-flat-noisy.zip",
      "ZIP",
      "272MB"
    ],
    [
      "Thick sample, z-stack",
      "/sample-large.zip",
      "ZIP",
      "300KB"
    ],
    [
      "Flat sample, 2D image",
      "/sample-flat.zip",
      "ZIP",
      "16KB"
    ]
  ],
  "folderPath": "/../datasets/challenge2013/Seashell"
}